Function reference • pmxploit

Loading runs
`load_nm_run()`	Load a NONMEM run data
NONMEM run object S3 methods for NONMEM run object
`filter(<nonmem_run>)`	Filter a NONMEM run object data
`group_by(<nonmem_run>)`	Group a NONMEM run object data
`ungroup(<nonmem_run>)`	Ungroup a NONMEM run object data
`slice(<nonmem_run>)`	Slice a NONMEM run object data
`print(<nonmem_run>)`	Print a NONMEM run object
Plot functions
`plot_categorical_covariates_distributions()`	Categorical covariates distributions bar charts
`plot_continuous_covariates_distributions()`	Continuous covariates distributions
`plot_convergence()`	Convergence plot
`plot_covariates_correlations()`	Continuous covariates correlations
`plot_dv_vs_predictions()`	Dependent variables vs Predictions plot
`plot_individual_ofv()`	Individual contribution to objective function plot
`plot_individual_profiles()`	Individual profiles (observations, predictions) versus independent variable
`plot_observed_profiles()`	Spaghetti plot
`plot_ofv()`	Objective function plot
`plot_parameters_correlations()`	Plot parameters correlations
`plot_parameters_distributions()`	Individual parameters distributions
`plot_parameters_vs_categorical_covariates()`	Plot parameters vs categorical covariates correlations
`plot_parameters_vs_continuous_covariates()`	Parameters vs continuous covariates correlations
`plot_residuals()`	Residuals plot
Summary functions
`summarize_categorical_covariates()`	Categorical covariates summary
`summarize_continuous_covariates()`	Continuous covariates distributions summary
`summarize_covariates_correlations()`	Continuous covariates correlations summary
`summarize_etabars()`	Summarize ETA bars
`summarize_omega()`	Summarize OMEGA matrix
`summarize_parameters_correlations()`	Parameters correlations
`summarize_parameters_distributions()`	Individual parameters distributions summary
`summarize_parameters_vs_continuous_covariates()`	Parameters vs continuous covariates correlations
`summarize_shrinkage()`	Summarize shrinkage
`summarize_sigma()`	Summarize SIGMA matrix
`summarize_thetas()`	Summarize THETA parameters
Run comparison
`compare_runs()`	Compare NONMEM runs estimation results
Outliers detection
`detect_outliers()`	Outliers detection
Parsing functions
`parse_nm_control_stream()`	Parse a NONMEM control stream
`parse_nm_ext()`	Parse a NONMEM iteration file (*.ext)
`parse_nm_phi()`	Parse a NONMEM phi file (*.phi)
Quality criteria computation
`quality_criteria()`	Quality criteria (QC) computations
Miscellaneous
`EXAMPLERUN`	NONMEM example run
`recode_categorical_covariates()`	Recode categorical covariates levels
`rename_compartments()`	Rename model compartments
`rename_covariates()`	Rename model covariates
`switch_covariates_type()`	Switch covariate type (categorical <-> continuous)
`theme_pmx()`	`pmxploit` ggplot2 theme

Reference

Loading runs

NONMEM run object

Plot functions

Summary functions

Run comparison

Outliers detection

Parsing functions

Quality criteria computation

Miscellaneous

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